Shemesh, O. A., et al. (2020). "Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator." Neuron 107(3): 470-486.e411.
Young-Gyu Yoon, Zeguan Wang, Nikita Pak, Demian Park, Peilun Dai, Jeong Seuk Kang, Ho-Jun Suk, Panagiotis Symvoulidis, Burcu Guner-Ataman, Kai Wang, and Edward S. Boyden, "Sparse decomposition light-field microscopy for high speed imaging of neuronal activity," Optica 7, 1457-1468 (2020)
Alon S, Goodwin DR, Sinha A, Wassie AT, Chen F, Daugharthy ER, Bando Y, Kajita A, Xue AG, Marrett K, Prior R, Cui Y, Payne AC, Yao CC, Suk HJ, Wang R, Yu CJ, Tillberg P, Reginato P, Pak N, Liu S, Punthambaker S, Iyer EPR, Kohman RE, Miller JA, Lein ES, Lako A, Cullen N, Rodig S, Helvie K, Abravanel DL, Wagle N, Johnson BE, Klughammer J, Slyper M, Waldman J, Jané-Valbuena J, Rozenblatt-Rosen O, Regev A; IMAXT Consortium, Church GM, Marblestone AH, Boyden ES. Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems. Science. 2021 Jan 29;371(6528):eaax2656. doi: 10.1126/science.aax2656. PMID: 33509999; PMCID: PMC7900882.
Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, Yoon YG, Freifeld L, Saulnier JL, Riegler C, Engert F, Hughes T, Drobizhev M, Szabo B, Ahrens MB, Flavell SW, Sabatini BL, Boyden ES. A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. 2018;14(4): 352-360.
Chang J-B, Chen F, Yoon Y-G, Jung EE, Babcock H, Kang JS, Asano S, Suk H-J, Pak N, Tillberg PW, Wassie A, Cai D, Boyden ES. Iterative expansion microscopy. Nature Methods. 2017;14(6): 593-599.
Phaneuf CR, Pak N, Saunders DC, Holst GL, Birjiniuk J, Nagpal N, Culpepper S, Popler E, Shane AL, Jerris R, Forest CR. Thermally multiplexed polymerase chain reaction. Biomicrofluidics. 2015;9(4):044117.
Pak N, Siegle JH, Kinney JP, Denman DJ, Blanche RJ, Boyden ES. Closed-loop, ultraprecise, automated craniotomies. Journal of Neurophysiology. 2015;113(10): 3943-3953.
Prevedel R, Yoon Y-G, Hoffmann M, Pak N, Wetzstein G, Kato S, Schrödel, Raskar R, Zimmer M, Boyden ES, Vaziri A. Simultaneous whole-animal 3D-imaging of neuronal activity using light-field microscopy. Nature Methods. 2014;11(7): 727-730.
Saunders DC, Holst GL, Phaneuf CR, Pak N, Marchese M, Sondej N, McKinnon M, Forest CR, Rapid, quantitative, reverse transcription PCR in a polymer microfluidic chip. Biosensors and Bioelectronics. 2013;44: 222-228.
Phaneuf CR, Oh K, Pak N, Saunders DC, Conrardy C, Landers JP, Tong S, Forest CR. Sensitive, microliter PCR with consensus degenerate primers for Epstein Barr virus amplification. Biomedical Microdevices. 2013;15(2): 221-231.
Pak N, Saunders DC, Phaneuf CR, Forest CR. Plug-and-play, infrared, laser-mediated PCR in a microfluidic chip. Biomedical Microdevices. 2012;14(2): 427-433.
Pak N, Dergance MJ, Emerick MT, Gagnon EB, Forest CR. An Instrument for controlled, automated production of micrometer scale fused silica pipettes. ASME Journal of Mechanical Design. 2011;133(6):061006-061006-5.
Phaneuf CR, Pak N, Forest CR. Modeling radiative heating of liquids in microchip reaction chambers. Sensors and Actuators A: Physical. 2011;167(2): 531-536.
Presentations
Chang J-B, Chen F, Yoon Y-G,Jung EE, Babcock H, Kang JS, Asano S, Suk H-J, Pak N,Tillberg PW, Wassie A, Zhuang S, Boyden ES. 20-nm resolution imaging of brain circuitry by next-generation expansion microscopy. Poster presentation, Neuroscience 2016, San Diego, CA, 2016.
Yoon Y-G, Pak N, Freifield L, Henninger MA, Deguchi J, Savidis N, Boyden ES. Sparse reconstruction light-field microscopy for high-resolution 3d-imaging of neuronal activity. Poster presentation, Neuroscience 2015, Chicago, IL, 2015.
Yoon Y-G, Prevedel R, Hoffmann M, Pak N, Wetzstein G, Kato S, Schrödel, Raskar R, Zimmer M, Boyden ES, Vaziri A. Simultaneous whole-animal 3D-imaging of neuronal activity using light-field microscopy. Neuroscience 2014, Washington, DC, 2014.
Pak N, Kinney JP, Boyden ES. Automation of brain surgery: Towards automation of In vivo Neuroscience. Poster presentation, Neuroscience 2013, San Diego, CA, 2013.
Pak N, Phaneuf CR, Saunders DC, Forest CR. Simultaneous amplification of multiple DNA targets with optimized annealing temperatures. Talk, Proceedings of the Biomedical Engineering Society (BMES) 2012 Annual Meeting, Atlanta, GA, 2012.
Holst GL, Saunders DC, Phaneuf CR, Pak N, Forest CR. Sensitive, open-loop, rapid, laser PCR system using transient thermal analysis, optimization, and environmental control. Poster presentation, Proceedings of the Biomedical Engineering Society (BMES) 2012 Annual Meeting, Atlanta, GA, 2012.
Phaneuf CR, Oh K, Pak N, Saunders DC, Conrardy C, Landers JP, Tong S, Forest CR. Sensitive, microliter PCR with degenerate primers for respiratory virus detection and discovery. Poster presentation, Proceedings of the Biomedical Engineering Society (BMES) 2012 Annual Meeting, Atlanta, GA, 2012.
Pak N, Holst GL, Phaneuf CR, Saunders DC, Forest CR. Control schemes for microfludic viral DNA/RNA amplification. Talk, Proceedings of the 27th Annual Meeting of the American Society for Precision Engineering, San Diego, CA, 2012.
Phaneuf CR, Pak N, Saunders DC, Forest CR. Rapid, independently controlled polymerase chain reaction via multiplexed laser radiation. Poster presentation, Proceedings of the 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences (μTAS), Seattle, WA, 2011.
Phaneuf CR, Pak N, Forest CR. Modeling and design of a microscale multiplexed temperature control system. Poster presentation, Proceedings of the 26th Annual Meeting of the American Society for Precision Engineering, Denver, CO, 2011.
Pak N, Phaneuf CR, Kodandaramaiah SB, Forest CR. Modulation of electromagnetic radiation using a dot matrix printer. Poster presentation, Proceedings of the 25th Annual Meeting of the American Society for Precision Engineering, Atlanta, GA, 2010.
Pak N, Dergance MJ, Emerick MT, Gagnon EB, Forest CR. An instrument for controlled, automated, continuous pulling of sub-micrometer fused silica pipettes. Talk, Proceedings of the 25th Annual Meeting of the American Society for Precision Engineering, Atlanta, GA, 2010.
Phaneuf CR, Pak N, Forest CR. Rapid, low-cost, microfluidic thermocycler for high-throughput genetic diagnostics, Talk, Proceedings of the ASME 2010 Summer Bioengineering Conference (SBC 2010), Naples, FL, 2010.